Syllabus

# Day Date   Topic Public Comment URL Youtube MPEG
  M 2/1 -- *YALE* Spring term classes begin, 8.20 a.m.        
      1st Half          
1 M 2/1 MG Introduction Pack 1 See below for MG Slides    
2 W 2/3 MDS DATA 1 - Genomics I   Genomic 1 [PDF]    
3 M 2/8 MDS DATA 2 - Genomics II   Genomic 2 [PDF]    
4 W 2/10 JR DATA 3 - Proteomics I   Proteomics 1 [PDF] Proteomics 1  
5 M 2/15 JR DATA 4 - Proteomics II   Proteomics 2 [PDF] Proteomics 2  
6 W 2/17 KC DATA 5 - Knowledge Representation & Databases   Database [PPTX] Database Database
-- M 2/22 -- *YALE* First break day        
7 W 2/24 MG MINING 1 - Personal Genomes Intro. (with an individual’s perspective)   Carl Slides [PDF] Carl Carl
Pack 2 See below for MG Slides              
8 M 3/1 MG MINING 2 - Seq. Comparison + Multi-seq Alignment Pack 3, 4 See below for MG Slides    
9 W 3/3 MG MINING 3 - Fast Alignment + Variant Calling (incl. a focused section on SVs) Pack 5, 6a See below for MG Slides    
10 M 3/8 MG MINING 4 - Basic Multi-Omics + Supervised Mining #1 Pack 6b, 7, 8a See below for MG Slides    
11 W 3/10 MG+TF Quiz on 1st Half        
12 M 3/15 MG MINING 5 - Supervised Mining #2 + Unsupervised Mining #1 Pack 8b-c, 9a-b See below for MG Slides    
13 W 3/17 MG MINING 6 - Unsupervised Mining #2 + Network Analysis #1 Pack 9c-e, 10a-b See below for MG Slides    
14 M 3/22 DG Privacy   Privacy [PPT] Privacy Privacy
-- W 3/24 -- *YALE* Third break day        
15 M 3/29 MG+TF TF short lecture + Network Analysis #2 Pack 10c-d See below for MG Slides    
  eQTL [PPT] NA NA          
      2nd Half          
16 W 3/31 RM Deep Learning I   DL 1 [PDF] DL 1 DL 1
17 M 4/5 RM Deep Learning II   DL 2 [PDF] DL 2 DL 2
18 W 4/7 RM Deep Learning III   DL 3 [PDF] DL 3 DL 3
19 M 4/12 MG+TF TF short lecture + Guest Lecture   Textmining [PPT] Textmining Textmining
  Manolis [PPT] Manolis Manolis          
20 M 4/19 CO Protein Simulation I CO Pack I See below for CO Slides Protein I Protein I
21 W 4/21 CO Protein Packing CO Pack II See below for CO Slides Protein II Protein II
22 Th 4/22 CO Protein Packing CO Pack II See below for CO Slides Protein III Protein III
23 M 4/26 CO Protein Simulation II CO Pack III See below for CO Slides Protein IV Protein IV
24 W 4/28 CO+TF Q & A on Simulation        
25 M 5/3 MG+TF Quiz on 2nd Half        
26 W 5/5 MG Final Presentations        
  F 5/7 -- *YALE* Classes end; Reading period begins        
  Th 5/13 -- *YALE* Final examinations begin        
  W 5/19 -- *YALE* Final examinations end